DNA Damage Atlas

GSM4044033-BrdU-Seq_Early_S_con_siRNA

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10018647,SRR10018648,SRR10018649,SRR10018650


Source Project ID:   

GSE136288

Cell Type:   

skin; foreskin


Organism:   

Homo sapiens


Strain:   

hTERT-immortalized fibroblasts


Treatment:   

16h timepoint siGENOME Non-Targeting siRNA Pool #2


Cell Phase:   

Early S


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

BrdU-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1211009891611010071111009941221.8353/
chr1845747115457485714574759418.018/
chr1211025115011025250811025177217.8855/
chr414983071499422149882414.6912/
chr124072580824072668824072616014.4065/
chr364194420641955006419492112.6975/
chr1742667245426687984266760312.4067/
chr714180901419956141892312.3773/
chr233327601333288163332814011.984/
chr418538506518538585618538537411.5049/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1211009891611010065911009941222.4687/
chr1211025121111025234111025177221.2999/
chr414984881499328149882418.9404/
chr1845747138457485714574759418.3072/
chr124072592024072668624072616016.3458/
chr364194447641953196419492115.4024/
chr1914571703145723391457204815.3449/
chr1210571770610571813910571794214.422/
chr1774543606745444627454415313.1608/
chr1778242879782438357824324712.9986/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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