DNA Damage Atlas

GSM4044037-BrdU-Seq_Early_S_2_con_siRNA

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10018663,SRR10018664,SRR10018665,SRR10018666


Source Project ID:   

GSE136288

Cell Type:   

skin; foreskin


Organism:   

Homo sapiens


Strain:   

hTERT-immortalized fibroblasts


Treatment:   

16h timepoint repeat siGENOME Non-Targeting siRNA Pool #2


Cell Phase:   

Early S


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

BrdU-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr124072592024072668624072628222.2255/
chr1657422491574234135742283520.9038/
chr1469139894691410806914018019.7716/
chr414984881499328149881218.9291/
chr1211009883911010065911009971318.885/
chr1211025121111025234111025176117.7667/
chr1774543606745444627454415717.5433/
chr223847378023847514323847424017.0862/
chr270661203706623417066163716.6538/
chr1647183034719193471888216.422/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr124072592024072668624072628222.2255/
chr1211009891611010065911009971319.5811/
chr223847392923847514323847424019.051/
chr414984881499328149881218.9291/
chr1211025121111025234111025176117.7667/
chr1774543606745444627454415717.5433/
chr1025256451252571572525681717.2895/
chr270661203706623167066163717.0279/
chr1647183294719193471888216.9162/
chr1845747138457485714574756116.6999/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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