DNA Damage Atlas


GSM4044039-BrdU-Seq_Early_S_Trip_DMSO




Basic Information

Manual

Sample ID:   

SRR10018671,SRR10018672,SRR10018673,SRR10018674


Source Project ID:   

GSE136288

Cell Type:   

skin; foreskin


Organism:   

Homo sapiens


Strain:   

hTERT-immortalized fibroblasts


Treatment:   

16h timepoint Triptolide treatment


Treatment Time:   

1hr


Cell Phase:   

Early S


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

BrdU-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1211009876011010080611009942825.3467/
chr1681610212816121968161080315.7299/
chr1258272909582739675827330115.4405/
chr1845747013457486484574833815.2857/
chr270661034706625547066165214.7692/
chr714174781420055141845814.7615/
chr1774543617745446257454421814.754/
chr124072585424072684424072630114.7109/
chr1914571239145725781457204914.598/
chr179696279783479742113.8149/
Download the Full Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab