DNA Damage Atlas


GSM4044041-BrdU-Seq_Early_S_Trip_100nM




Basic Information

Manual

Sample ID:   

SRR10018679,SRR10018680,SRR10018681,SRR10018682


Source Project ID:   

GSE136288

Cell Type:   

skin; foreskin


Organism:   

Homo sapiens


Strain:   

hTERT-immortalized fibroblasts


Treatment:   

16h timepoint Triptolide treatment


Treatment Time:   

1hr


Treatment Dose:   

100nM


Cell Phase:   

Early S


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

BrdU-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM045322294124.442/
chrM592473786702100.608/
chr1211025109211025229111025176432.2616/
chr1211009895511010070811009971629.3254/
chr714180751419996141853420.4641/
chr270661134706623367066165118.1346/
chr1914571131145724721457203817.8052/
chr1681610415816122408161081017.6053/
chr1014016969140178141401723817.446/
chr124072573424072679224072618617.0301/
Download the Full Peak List



Motif Analysis

Manual





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