DNA Damage Atlas

GSM4044058-gH2AX_con_siRNA

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10018743, SRR10018744, SRR10018745, SRR10018746


Source Project ID:   

GSE136291

Cell Type:   

skin; foreskin


Organism:   

Homo sapiens


Strain:   

hTERT-immortalized fibroblasts


Treatment:   

siGENOME Non-Targeting siRNA Pool #2


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

ChIP-seq (anti-γH2AX)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA16600167991669935.4418/
chr1753578800535791995357899913.8625/
chr111894240011894379911894309913.0323/
rDNA31200325993189912.4885/
chr657902000579025995790229911.0905/
rDNA27000293992819910.7351/
chr1311034720011034939911034829910.6734/
chr1970526007053399705299910.5121/
chr553810200538109995381059910.1458/
chr41690776001690781991690778999.57594/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA16600167991669935.4418/
chr111894260011894379911894309914.8889/
rDNA13600151991399913.9646/
chr1753578800535791995357899913.8625/
chr1281978000819799998197839912.8246/
rDNA31200325993189912.4885/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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