Sample Detail

DNA Damage Atlas

GSM4044059-gH2AX_SUPT5H_siRNA

Basic Information

Manual

Sample ID:

SRR10018747, SRR10018748, SRR10018749, SRR10018750

Source Project ID:

Cell Type:

skin; foreskin

Organism:

Homo sapiens

Strain:

hTERT-immortalized fibroblasts

Treatment:

siGENOME Human SUPT5H siRNA Pool

Layout:

PAIRED

Instrument model:

NextSeq 500

Technique:

ChIP-seq (anti-γH2AX)

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	16600	16799	16699	23.2705	/
chr5	105411600	105412599	105412099	13.0372	/
chr6	57902000	57902599	57902299	12.5627	/
chr6	113701800	113702599	113702199	12.1953	/
chr17	53578800	53579399	53579099	11.7574	/
chr7	7719400	7720199	7719799	11.4104	/
chr6	129947200	129948399	129947799	11.2649	/
chr3	39760400	39761399	39760899	11.1058	/
chr12	132650200	132650999	132650599	10.7463	/
rDNA	27200	29199	28199	10.4246	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	16600	16799	16699	23.2705	/
chr6	57902000	57902399	57902299	18.6181	/
chr17	53578800	53579199	53579099	17.4091	/
chr10	122493600	122495599	122495099	13.6581	/
chr5	105411600	105412599	105412099	13.0372	/
chrX	88159200	88159999	88159299	12.6783	/

Download the Full Merged Peak List

Visualization

Manual

Download the matrix file

Motif Analysis

Manual

Download

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