DNA Damage Atlas

GSM4047452-MCF7_cells_siControl_BLISS

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10045022


Source Project ID:   

GSE136365

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

siCtrl transfection


Treatment Time:   

48hrs


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr17599407425994125959941077505.062/
chr7893941498939434989394248470.481/
chr3131301833131302061131301946433.338/
chr4160314094160314296160314194384.304/
chrUn_gl000216804788088680616363.239/
chr18307368043073700530736903315.995/
chrUn_gl000216754867618375924259.878/
chr17599638425996421559964027245.962/
chr9162376101623781016237709223.478/
chr12523491705234937052349269188.192/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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