DNA Damage Atlas

GSM4047453-MCF7_cells_siRAD51_BLISS

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10045023


Source Project ID:   

GSE136365

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

siRAD51 transfection


Treatment Time:   

48hrs


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 1


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr43602725936027488360273722005.31/
chr121054566801054569281054568031619.62/
chr121631715816317396163172761521.45/
chr109322182593222032932219271473.72/
chr21009311681009314161009312911436.38/
chr133801085838011096380109761413.85/
chr77797877877979003779788891325.44/
chr41622846161622849491622847811300.61/
chr17011728270117607701174431229.34/
chr12065669822065673412065671601227.8/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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