DNA Damage Atlas

GSM4047454-MCF7_cells_siXRCC4_BLISS

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10045024


Source Project ID:   

GSE136365

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

siXRCC4 transfection


Treatment Time:   

48hrs


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr173003442030034669300345434496.91/
chr81052210021052212491052211244160.15/
chr36431816864318427643182963347.94/
chr138290891382909160829090352996.37/
chr21309701101309704331309702702872.47/
chr12065670932065673832065672372612.15/
chr71988939819889656198895262576.77/
chr221774132617741574177414492507.49/
chr142602069726020915260208052223.78/
chr213390513033905377339052522123.44/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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