DNA Damage Atlas

GSM4047455-MCF7_cells_siTEAD4_BLISS

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10045025


Source Project ID:   

GSE136365

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

siTEAD4 transfection


Treatment Time:   

48hrs


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002168047080745806061019.29/
chr17599407425994131459941084872.744/
chr1150254522150254889150254704421.894/
chr17587548665875521658755040396.622/
chr14245842972458459524584445385.207/
chr5323132983231361532313455328.433/
chr1229339346229339648229339496282.868/
chr4185520731855246618552268278.505/
chrUn_gl000216755157634675881260.211/
chrUn_gl000216111201256111793253.804/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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