DNA Damage Atlas

GSM4047456-MCF7_cells_Mock_Eto_BLISS

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10045026


Source Project ID:   

GSE136365

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

DMSO (mock)


Treatment Time:   

4hrs


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr17622233106222363962223473644.823/
chrUn_gl000220109055110905109717479.731/
chrUn_gl000220153121155175153688432.696/
chr4185520791855246818552272393.695/
rDNA292757804297316.357/
chrUn_gl000220158527160564159278311.824/
chrUn_gl000216754857616975916258.769/
chr4306369663063716630637065213.402/
rDNA9149132559873200.25/
chrUn_gl000220114489118703115306184.692/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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