DNA Damage Atlas

GSM4047457-MCF7_cells_Eto_BLISS

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10045027


Source Project ID:   

GSE136365

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

4hrs


Treatment Dose:   

5uM


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr91343609251343611381343610302817.48/
chr91343657461343659591343658512745.49/
chr11122929617122929820122929717609.386/
chrUn_gl000220109055111044109758269.339/
chr4185521101855246818552288265.585/
chrUn_gl000220153027155131153730249.273/
rDNA642668166620249.036/
rDNA363558784338232.458/
chrUn_gl000220155818156198156007231.376/
chrUn_gl000220111851112243112046219.077/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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