DNA Damage Atlas


GSM4047458-MCF7_cells_Mock_E2_BLISS




Basic Information

Manual

Sample ID:   

SRR10045028


Source Project ID:   

GSE136365

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

EtOH


Treatment Time:   

1hr


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

BLISS


Others:   

As a control for E2 treatment, cella were grown for two days on hormone-stripped media followed by 1hr with EtOh


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1239684661239684921239684790794.165/
chr8536575785365779053657683768.475/
chr20493593114935987849359627654.029/
chrX117722253117722510117722380625.966/
chr5445488064454922244548975623.237/
chr13271031502710342227103285621.817/
chr20147809341478114914781040608.507/
chr11762269497622721376227080550.572/
chr1206308400206308604206308501548.819/
chr9283017283243283129544.452/
Download the Full Peak List



Motif Analysis

Manual





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