DNA Damage Atlas

GSM4047460-MCF7_cells_Mock_DRB_sBLISS

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10045030


Source Project ID:   

GSE136365

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

DMSO (mock)


Treatment Time:   

30mins


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.0014


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr126619385661975966195711192.44/
rDNA8993109769428702.864/
chrUn_gl000220114447116654114858679.535/
chr12664512316645179266451416585.487/
chr6160521612160521974160521792569.417/
chrUn_gl000220157085160351158820530.862/
chr15779107277791107977910902462.455/
rDNA351662044875347.77/
chrUn_gl000220152851155601154268307.53/
chrUn_gl000220116760118533117929303.96/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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