DNA Damage Atlas

GSM4047461-MCF7_cells_DRB_sBLISS

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10045031


Source Project ID:   

GSE136365

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

DRB


Treatment Time:   

30mins


Treatment Dose:   

60uM


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001437


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220152713160735159080606.127/
chr12664511526645159266451411215.696/
chr6160521615160521974160521793201.641/
chr7107410495107410958107410675144.692/
chr15779107327791107977910904131.926/
chr4170881817094681708990120.243/
chr652860185528609205286061297.9822/
chrX78455649784561077845593697.1082/
chr216995181416995236616995217694.7307/
chr316766792116766876316766817576.2484/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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