DNA Damage Atlas

GSM4047462-MCF7_cells_siCtrl_sBLISS

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10045032


Source Project ID:   

GSE136365

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

siCtrl transfection


Treatment Time:   

48hrs


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001458


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr4170882217091661708993419.492/
chr12664511436645159266451409357.927/
rDNA764388048152355.662/
chr6160521616160521969160521791315.855/
chrUn_gl000220157024160334157552287.909/
chrUn_gl000220114274116426115885272.156/
rDNA8840109939699245.124/
chr15779107307791113777910903182.002/
chr4825152288251558982515407127.802/
chr6_mann_hap4121848812188271218656126.267/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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