DNA Damage Atlas

GSM4047463-MCF7_cells_siRAD51_sBLISS

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10045033


Source Project ID:   

GSE136365

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

siRAD51 transfection


Treatment Time:   

48hrs


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.005613


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220113085116380114984167.397/
chrUn_gl000220157013160412158955158.795/
rDNA7572109339550156.544/
chrUn_gl000220152846155474154349128.345/
chr417088231709267170899183.9139/
rDNA02409126870.2111/
chr1912821390128219781282187758.3347/
chrUn_gl00021680376809138067149.5581/
chr1495999749959999499599984843.3688/
chr616052161716052196516052179041.9187/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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