DNA Damage Atlas

GSM4055047-pdr1sae2_vegetative_YPD_UT_BioRep1_TechRep1

Basic Information Genome Browser Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8601357


Source Project ID:   

GSE136675

Organism:   

Saccharomyces cerevisiae


Strain:   

BY4741


Treatment:   

NT


Genotype:   

pdr1Δsae2Δ


Cell Phase:   

vegetative (YPD)


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

CC-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM44501/93.9982/
chr104456458444564887/7.71474/
chr14209890042099319/5.57892/
chr2121621470121621923/5.16019/
chr145819181458192272/5.10386/
chr194155943241559895/5.04874/
chr1199195366199195911/5.00396/
chr165623014456230784/4.86993/
chr9139534634139535282/4.80981/
chr133832625238326746/4.73192/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
124895684908054901821589.63/
17723537723974247552.204/
8211964216536214245444.11/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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