DNA Damage Atlas

GSM4055050-pdr1mre11_vegetative_YPD_VP16_BioRep1_TechRep1

Basic Information Genome Browser Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8601360


Source Project ID:   

GSE136675

Organism:   

Saccharomyces cerevisiae


Strain:   

BY4741


Treatment:   

VP16


Treatment Time:   

4hrs


Treatment Dose:   

1mM


Genotype:   

pdr1Δmre11Δ


Cell Phase:   

vegetative (YPD)


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

CC-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM46996/80.3122/
chr101598386715984236/7.60265/
chr36513358265133952/7.5821/
chr1162015973162016364/7.17488/
chr10131725949131726349/7.01345/
chr8111860088111860491/6.96124/
chr12123387573123388026/6.19289/
chr2208142717208143200/5.80824/
chr12236973022370624/5.75301/
chr34524551645246012/5.656/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
124888444908304901981151.21/
8212030216503214976739.802/
13903987905045904545288.454/
2381400383885382080266.647/
4530084531338530770263.255/
16950029720895837261.075/
12837135838268837685245.952/
13914773916116915651242.567/
4533909535666534795242.184/
12471953473029472499237.277/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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