DNA Damage Atlas


GSM4055052-pdr1_vegetative_YPD_VP16_BioRep2_TechRep1




Basic Information

Manual

Sample ID:   

SRR8601362


Source Project ID:   

GSE136675

Organism:   

Saccharomyces cerevisiae


Strain:   

BY4741


Treatment:   

VP16


Treatment Time:   

4hrs


Treatment Dose:   

1mM


Genotype:   

pdr1Δ


Cell Phase:   

vegetative (YPD)


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

CC-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM24857/93.224/
chr10126600123126600649/4.9395/
chr1240540504240540875/4.90222/
chr6129016315129016756/4.71325/
chr17517193775172324/4.69954/
chr127976766179768263/4.31591/
chr57481797774818468/4.23328/
chr182208182422082255/4.21978/
chr68455507384555506/4.20029/
chr101538207015382516/4.07786/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
12488929490816490211914.344/
8211969216528214190657.62/
13634267635275634762234.211/
4533913535385534458233.943/
5366291367675366885185.117/
4413002414783413889160.796/
Download the Full Merged Peak List



Motif Analysis

Manual





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