DNA Damage Atlas

GSM4062182-WT_G1_VP16_Rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR8670108


Source Project ID:   

GSE136943

Cell Type:   

RPE1


Organism:   

Homo sapiens


Treatment:   

VP16


Treatment Time:   

20min


Treatment Dose:   

100uM


Genotype:   

WT


Cell Phase:   

G1


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

CC-seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM04510/67.0259/
chr168478785084788299/12.6856/
chr134437863844379406/12.1842/
chr6155851408155851839/11.3275/
chr2102636961102637321/11.3013/
chr62056432520564866/11.2804/
chr59424462994245142/11.103/
chr2529353529755/10.1206/
chr2099589369959356/9.68682/
chr11027177710272494/9.64629/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM3451019866.7997/
chr106996816269968659699683359.00465/
chr44169484041695364416951827.76425/
chr18599261385993313859928767.55572/
chr11625320771625326781625321667.44644/
chr11726084021726086771726084877.39721/
chr82910724629107747291076687.30862/
chr201751761717518039175176656.74864/
chr51569908071569912851569909795.958/
chr101161731171161735131161731885.13695/
Download the Full Merged Peak List


Visualization

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Motif Analysis

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