DNA Damage Atlas

GSM4062195-WT_Async_VP16_Rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8670115


Source Project ID:   

GSE136943

Cell Type:   

RPE1


Organism:   

Homo sapiens


Treatment:   

VP16


Treatment Time:   

20min


Treatment Dose:   

100uM


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

CC-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10119132329119134927/1.55971/
chr1149221893149225602/1.54682/
chr1649091344910533/1.49124/
chr55659374456595256/1.47266/
chr109909172899093962/1.46814/
chr6119121356119122385/1.4621/
chr107917467079177800/1.46124/
chr4136197946136199570/1.43286/
chr10101127880101130153/1.42971/
chr113501932535020427/1.42896/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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