DNA Damage Atlas

GSM4062200-top2b-KO_Async_VP16_Rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8670101


Source Project ID:   

GSE136943

Cell Type:   

RPE1


Organism:   

Homo sapiens


Treatment:   

VP16


Treatment Time:   

20min


Treatment Dose:   

100uM


Genotype:   

TOP2B-/-


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

CC-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr134715011447150531/4.67412/
chr1218832169218832568/4.39648/
chr123087205130872430/4.11421/
chr211710343517103919/4.02708/
chr114753654447537179/3.9903/
chr69807836298078757/3.94756/
chr2206548193206548793/3.89821/
chr109059502890595583/3.86309/
chr4164083082164083486/3.85962/
chr10112389512112390028/3.77734/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr123087205130872430308722394.11421/
chr74382499943825541438251803.95575/
chr61588387121588392911588389022.69307/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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