DNA Damage Atlas

GSM4094588-DIP_8oxodG_exp1_repl1_G0-arrested_MCF10A

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR10173728


Source Project ID:   

GSE137929

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Cell Phase:   

G0-arrested


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

OxiDIP-Seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr14103371389103372786103372017269.007/
chr1410336943110336992510336967798.5179/
chrM0451343789.839/
chr1410336343810336389610336366678.298/
chr813981677813981905813981753878.2402/
chr1410333616010333710510333667377.0569/
chr1948900381489017044890131775.9229/
chr817801571782132178095072.5362/
chr1648964079489669194896624170.1568/
chrUn_gl00022976079402864670.0249/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr14103371396103372779103372017271.731/
chr14103336390103336934103336673133.185/
chr14103369439103369916103369677102.029/
chr1410334253910334301210334277597.0896/
chr813981679913981891013981753884.3306/
chr817801571781894178095082.3697/
chr1410336344510336388910336366680.7669/
chr1948900401489016544890131780.1644/
chr1648964267489669194896624175.0612/
chrUn_gl00022976199304864674.3791/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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