DNA Damage Atlas

GSM4094589-DIP_8oxodG_exp1_repl2_G0-arrestedMCF10A

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR10173729


Source Project ID:   

GSE137929

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Cell Phase:   

G0-arrested


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

OxiDIP-Seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr14103371396103372779103372057284.67/
chr14103336390103336934103336602139.676/
chr14103369439103369916103369676106.731/
chr14103342539103343012103342774102.374/
chrUn_gl00022976199304865287.5756/
chr1923647781236530932364839687.4822/
chr1924361737243645972436335886.3282/
chr1410336344510336388910336366685.7825/
chr511981971200298119957580.5295/
chr1948900401489016544890132380.4986/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr14103371396103372779103372057284.67/
chr14103336390103336934103336602139.676/
chr14103369439103369916103369676106.731/
chr14103342539103343012103342774102.374/
chr1923647978236530932364839690.814/
chrUn_gl00022976199304865287.5756/
chr1924361737243645972436335886.3282/
chr1410336344510336388910336366685.7825/
chr511981971200298119957580.5295/
chr1948900401489016544890132380.4986/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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