DNA Damage Atlas

GSM4100899-p53-KO_ABLKi_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10202049


Source Project ID:   

GSE138136

Cell Type:   

v-Abl/Bcl2 transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

3days


Treatment Dose:   

3uM


Genotype:   

p53-/-


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6706078147060823970608033107662-
chr6705186187051905570518846107474-
chr670573006705734427057322764698-
chr670371769703721997037199061568.6-
chr670314689703151207031489757867+
chr668121616681218306812182455779.7-
chr669900218699006496990042753866.3+
chr669814425698148486981463452858.1+
chr670171806701723067017181151367.5+
chr669879141698795676987935344703.6+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6705186217051885270518846208432-
chr6706078147060823770608033104834-
chr670406466704066847040647272434.9+
chr670340873703410907034087968290.1+
chr669700764697009856970077067683.2+
chr668121616681218306812182462254.3-
chr670698860706990707069906461657.9-
chr670371780703721977037199057869.8-
chr670573006705734317057322756980.6-
chr670073813700742397007402756449.1+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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