DNA Damage Atlas

GSM4100910-Xrcc4-KO_p53-KO_Released_rep5

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10202060


Source Project ID:   

GSE138136

Cell Type:   

v-Abl/Bcl2 transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

3days


Treatment Dose:   

3uM


Genotype:   

Xrcc4-/- p53-/-


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr66760619167612019676104556924.11-
chr66790907867917040679140113120.39-
chr66867641168681605686788442703.71-
chr66842218568428875684261642092.26+
chr161908284119088730190851201740.81+
chr66976031369767334697622721572.71+
chr67038353570387840703866271532.57-
chr66826707668274332682703881367.07-
chr66886093168866401688623541335.99+
chr66862912268635453686332291185.06+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr66760662967611206676104556111.84-
chr66842539268426655684261644339.44+
chr161908330919085570190851203000.38+
chr66886198668862625688623542898.39+
chr67038528870387315703866272392.85-
chr66987902469880175698791091470.7-
chr6694155926941713269416179887.365-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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