DNA Damage Atlas

GSM4120370-DMCPD10mR1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10277907


Source Project ID:   

GSE138846

Cell Type:   

S2-DGRC cell


Organism:   

Drosophila melanogaster


Treatment:   

UV (254 nm)


Treatment Dose:   

20J/m2


Genotype:   

WT


Harvested Time:   

repair time: 10 minutes


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 4000


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3R20855232088827208730433.9947/
chr3L57393558184557665029.5318/
chr3L24917962496351249383429.2454/
chr3L34044723411410340865628.73/
chr3L24600572463359246236927.3014/
chr3L69609006965156696253125.6454/
chr3L87469887850687794925.5112/
chr3L88070588947188510625.2418/
chr3R29313304293159952931546325.1161/
chr2R90949899097622909637724.887/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr3R20855232088827208730433.9947/
chr3L24917962496351249383429.2454/
chr3L87469887845987794925.7778/
chr3L69609466965156696253125.7625/
chr2R90950249097622909637725.2096/
chr3R29313308293159952931546325.1535/
chr3L10327111036810687624.8934/
chr2R15860283158647981586127624.8695/
chr3R22681161226858412268471624.6565/
chr2L13126060131286041312703024.0867/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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