DNA Damage Atlas


GSM4122777-WT_END-seq_with_20_mice_rep1




Basic Information

Manual

Sample ID:   

SRR10286908


Source Project ID:   

GSE138915

Cell Type:   

Testis (20 mice)


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

age: juvenile


Spike-in Intensity:   

7.59801


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.004979



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45638948621615110678147.432-
chrUn_GL45639662321784812021114.694-
chr1297055519970677019706178627.2791-
chr1189603760896201108961080218.079-
chr1395384234953999639539213216.8045-
chr1092673134926888969268081713.5179+
chr1234587571346032263459634812.6153+
chr298100685981159169810947912.0948+
chr214755470814756990214756145612.0313-
chr637772135377872963777870611.8179-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45638949051519310678197.016-
chrUn_GL45639662321780012021141.318-
chr1297055699970667649706178628.3662-
chr1189604514896192058961080220.5389-
chr1395384492953997819539213217.1366-
chr1092673691926885329268081714.7302+
chrX14347723414348861514348310214.6293-
chr1234587854346027893459634813.1608+
chr637772175377872963777870612.1453-
chr836564192365788003657102312.107+
Download the Full Merged Peak List




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