DNA Damage Atlas

GSM4122778-WT_END-seq_with_20_mice_rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10286909


Source Project ID:   

GSE138915

Cell Type:   

Testis (20 mice)


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

age: juvenile


Spike-in Intensity:   

25.1964


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003912


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45638949051519310678232.271-
chrUn_GL45639661551780012024166.365-
chr1297055699970667649706178626.765-
chr1189604514896192058961301720.9845+
chrX14347723414348861514348310218.1037-
chr1395384492953997819539213216.993-
chr1092673691926885329268182815.128+
chr1234587854346027893459406913.1252-
chr637772175377872963777863112.444-
chr868235666682505846824416212.2816+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45638949051519310678197.016-
chrUn_GL45639662321780012024141.318-
chr1297055699970667649706178628.3662-
chr1189604514896192058961301720.5389+
chr1395384492953997819539213217.1366-
chr1092673691926885329268182814.7302+
chrX14347723414348861514348310214.6293-
chr1234587854346027893459406913.1608-
chr637772175377872963777863112.1453-
chr836564192365788003657101612.107+
Download the Full Merged Peak List


Visualization

Manual





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