DNA Damage Atlas


GSM4122779-WT_END-seq_with_1_mouse




Basic Information

Manual

Sample ID:   

SRR10286910


Source Project ID:   

GSE138915

Cell Type:   

Testis (1 mouse)


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

age: juvenile


Spike-in Intensity:   

no spike in


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003129



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45638972251592510678131.003-
chr12970563629706764997061445113.803+
chrUn_GL4563966843165991202388.042-
chr698842269895690988996737.24+
chr514666109114667060514666670035.8809-
chr514760557514761537714761154119.0414-
chr1293571939935810379357711617.5492-
chr871427524714370467143317017.4675-
chr1189604561896196028961080215.8434-
chr1395384561953998919539100812.7036-
Download the Full Peak List




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