DNA Damage Atlas

GSM4122780-WT_END-seq_with_ExoT_only

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10286911


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

WT


In-situ Treatment:   

Exo T


Harvested Time:   

age: juvenile


Spike-in Intensity:   

no spike in


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001492


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr4254683802547827725472283107.761+
chrUn_GL4563966160178001202389.1577-
chr312893083712894067012893678876.1998-
chrUn_GL4563897935158571067846.8437-
chr1297055851970673429706144339.8995+
chr1293571213935809569357714028.8074-
chr871427207714369927143317023.1892-
chr514666075614668845014666670022.3638-
chr514760573014761515914761154019.2875-
chr1486193603862030758619905116.4688-
Download the Full Peak List


Visualization

Manual





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