DNA Damage Atlas


GSM4122781-WT_END-seq_with_MRN--CtIP--Mn




Basic Information

Manual

Sample ID:   

SRR10286912


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

WT


In-situ Treatment:   

Exo T + MRN + CtIP + MnCl2


Harvested Time:   

age: juvenile


Spike-in Intensity:   

no spike in


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.014773



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563966043179561202335.3122-
chrUn_GL4563894811161831067824.358-
chrX1434773521434884941434830799.81991-
chr129705563397067543970614433.74381+
chr51556898515719106155858312.3151+
chr64764753947688929476742622.16019-
chr64773512947782003477473882.15904+
chr82025562620444913203328351.76493+
chr173073589308804930801941.76458+
chr85510864655125607551223311.7046+
Download the Full Peak List




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