DNA Damage Atlas


GSM4122783-WT_END-seq_with_ExoT--TDP2




Basic Information

Manual

Sample ID:   

SRR10286914


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + TDP2


Harvested Time:   

age: juvenile


Spike-in Intensity:   

10.6261


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000642



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45639664661791012023101.637-
chr1297055767970676749706143539.8047+
chrUn_GL4563894728157431067838.1754-
chr425468416254782012547228323.5598+
chr312893087112894014912893678814.7632-
chr118960370889619569896108239.31709-
chr139538495695399662953911198.59235-
chrX1665288931665433171665373598.29857+
chr51466608641466883971466667007.41922-
chr63777246437787364377806847.08314+
Download the Full Peak List




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