DNA Damage Atlas


GSM4122784-ATM-KO_END-seq




Basic Information

Manual

Sample ID:   

SRR10286915


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

ATM-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

age: juvenile


Spike-in Intensity:   

2.93281


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.012945



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563894918161661067881.8557-
chrUn_GL4563966753179071202380.0565-
chr1297055903970676639706144325.6467+
chr41344627331344862601344786988.85706+
chrX1434772321434885621434831028.55519-
chr69884524989597698899677.97658+
chr118960301589621067896108027.97244-
chr41519604031519789261519704007.95352+
chr92234458622363645223535127.31741-
chr72625894326277248262684487.15247+
Download the Full Peak List




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