DNA Damage Atlas


GSM4122785-ATM-KO_END-seq_with_ExoT_only




Basic Information

Manual

Sample ID:   

SRR10286916


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

ATM-/-


In-situ Treatment:   

Exo T


Harvested Time:   

age: juvenile


Spike-in Intensity:   

11.6389


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001336



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563967058170891202397.3223-
chrUn_GL4563896827163011067834.7405-
chr1297055535970672029706144314.2267+
chr871427207714371507143317012.9724-
chr129357115693580947935771469.2459-
chr41344632321344859731344727698.35462-
chr51476057891476153341476115407.71298-
chr118960312089621189896130177.15935+
chr51466608661466896251466667006.63454-
chr51420370701420557041420473226.41182+
Download the Full Peak List




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