DNA Damage Atlas


GSM4122788-WT_for_EXO1-KO_END-seq




Basic Information

Manual

Sample ID:   

SRR10286891


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

age: juvenile


Spike-in Intensity:   

no spike in


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.051863



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563894814161661067852.7449-
chrUn_GL4563966043170881202349.9708-
chr514666085614667056814666670018.7347-
chrX14347722514348879914348303213.4038+
chr129357108593582599935771468.32089-
chr87142718571437068714331707.07312-
chr51476055561476153881476115406.2615-
chr163082361530833555308296064.52794-
chr129705564597067593970614434.01195+
chrY9073157990816073907405452.86079+
Download the Full Peak List




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