DNA Damage Atlas


GSM4122789-53BP1-KO_END-seq




Basic Information

Manual

Sample ID:   

SRR10286892


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

53BP1-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

age: juvenile


Spike-in Intensity:   

4.93045


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.007169



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45638947191630710678161.607-
chrUn_GL45639666101708212021150.75-
chr1297055727970675159706178637.271-
chrX14347736714348887514348303213.9099+
chr1189603971896194438961080212.8595-
chr1311835673511837207211836540212.1347+
chr698844069895997988996711.8056+
chr832242324322579183224936411.1932-
chr123458726434602848345940699.68576-
chr61428542141428697621428630649.56371+
Download the Full Peak List




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