DNA Damage Atlas


GSM4122790-BRCA1del11_53BP1-KO_END-seq




Basic Information

Manual

Sample ID:   

SRR10286893


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

BRCA1Δ11 53BP1-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

age: adult


Spike-in Intensity:   

21.4429


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.014825



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45639660351780012023100.672-
chrUn_GL4563894774158351067892.2758-
chr1297055619970673779706178612.8807-
chrX14347714514348900414348303210.8252+
chr109267280192689416926801014.47173-
chr139538395195399830953933074.21495+
chr51466608641466705741466667003.60789-
chr91150924131151080031151011983.54404+
chr101055710421055864421055777353.53313-
chr61428545341428697371428604543.44978-
Download the Full Peak List




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