DNA Damage Atlas


GSM4122791-BRCA1del11_53BP1_S25A_END-seq




Basic Information

Manual

Sample ID:   

SRR10286894


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

BRCA1Δ11 53BP1S25A


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

age: juvenile


Spike-in Intensity:   

5.45516


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.008164



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45638949171619210678126.927-
chrUn_GL4563966044179031202191.9757-
chr1297055754970676559706144341.6468+
chrX14347709414348877314348310210.9059-
chr698843239895954988996710.5995+
chr139538374795399977953931648.13049+
chr109267265892688947926825197.04974+
chr67351455973524014735201146.24498-
chr61428543501428700761428630646.02027+
chr11540963941541119521541021735.84837-
Download the Full Peak List




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