DNA Damage Atlas


GSM4122792-WT_for_BRCA1del11_53BP1_S25A_END-seq




Basic Information

Manual

Sample ID:   

SRR10286895


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

age: juvenile


Spike-in Intensity:   

13.5507


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.004734



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45638949581501110678163.849-
chrUn_GL45639665511783312021113.887-
chr1297055519970676199706178617.2038-
chr1395384201954000249539213212.4448-
chrX14347780114348895314348308511.0305-
chrX16652870016654315116653735910.4849+
chr1092673101926887709267992910.1189-
chr83656378136578380365710169.69016+
chr42546838025478254254722839.62214+
chr61428541311428698091428631119.27969+
Download the Full Peak List




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