DNA Damage Atlas


GSM4122793-BRCA1del11_p53-HET_END-seq




Basic Information

Manual

Sample ID:   

SRR10286896


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

BRCA1Δ11 p53+/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

age: adult


Spike-in Intensity:   

35.2831


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.02481



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563894924167161067893.3275-
chrUn_GL4563966463175031201870.1891-
chr514666116414667304614666670033.4426-
chr1293571131935814079357714621.9338-
chr871427412714363947143317020.2509-
chr1297055798970674649706178620.0498-
chrX14347717814348897714348310214.2841-
chr514760566414761546514761154012.7189-
chr1630824287308335653082960611.2644-
chr31289309141289407901289367889.12966-
Download the Full Peak List




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