DNA Damage Atlas


GSM4122795-DMC1-KO_END-seq




Basic Information

Manual

Sample ID:   

SRR10286898


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

DMC1-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

age: juvenile


Spike-in Intensity:   

2.27199


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.010905



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45638952161556910678105.731-
chrUn_GL4563966405178761202192.4693-
chr514666070614668890014666670131.5292-
chr871427571714371687143317030.8732-
chr1293571308935810219357714629.6166-
chr514760572514761558614761154124.7311-
chr614058098914060058814059260823.2126+
chr1189601145896235898961350717.0808+
chr1092672104926898929268251917.041+
chr1630823792308331433082960717.0041-
Download the Full Peak List




Copyright © 2023 All Rights Reserved by Wu lab