DNA Damage Atlas

GSM4122796-B6xCAST_hybrid_END-seq_rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10286899


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6xCAST/EiJ


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

age: juvenile


Spike-in Intensity:   

2.00059


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002334


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr5146661305146669823146666701107.163-
chrUn_GL4563967933151691202196.606-
chr514760850614761451714761154172.3614-
chr1630824862308327373082960758.3422-
chrUn_GL4563898430135781068757.7335-
chr1297056104970675539706144344.2767+
chr871428693714370217143317129.8895-
chr1293571401935791049357714116.2753-
chr990296653903054999030239113.3994-
chrX14347999114348747314348303212.0909+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45638984301357810687152.524-
chrUn_GL45639679331516912021125.845-
chr514666130514666982314666670162.7953-
chr514760850614761451714761154141.0784-
chr1297056104970675539706144335.3599+
chr1630824862308327373082960731.3578-
chr871428693714370217143317122.4318-
chr1293572486935791049357714115.2008-
chrX14347999114348747314348303214.2998+
chrX16136983216137937816137340910.4755-
Download the Full Merged Peak List


Visualization

Manual





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