DNA Damage Atlas

GSM4122797-B6xCAST_hybrid_END-seq_rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10286900


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6xCAST/EiJ


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

age: juvenile


Spike-in Intensity:   

107.674


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001018


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45638952891580010678121.175-
chrUn_GL45639670851780012023104.785-
chr1297055746970676959706178625.3621-
chr514666086614667036414666670016.567-
chr390214629036199902974115.0075+
chr871427333714371647143316412.766-
chrX16136763916138165016137358712.1451-
chrX14347717514348880714348310210.671-
chr129357248693580686935771409.37461-
chr43256601232581546325747048.38427+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45638984301357810678152.524-
chrUn_GL45639679331516912023125.845-
chr514666130514666982314666670062.7953-
chr514760850614761451714761154041.0784-
chr1297056104970675539706178635.3599-
chr1630824862308327373082960631.3578-
chr871428693714370217143316422.4318-
chr1293572486935791049357714015.2008-
chrX14347999114348747314348310214.2998-
chrX16136983216137937816137358710.4755-
Download the Full Merged Peak List


Visualization

Manual





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