DNA Damage Atlas

GSM4122798-PRDM9-KO_END-seq

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10286901


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

PRDM9-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

age: juvenile


Spike-in Intensity:   

2.2708


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.011798


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr514666116114667045414666670778.6418-
chrUn_GL4563968709178371202168.3065-
chrUn_GL4563896217153741067830.1084-
chr1297056476970669069706178623.4457-
chr1293572349935810379357714121.0287-
chr871427627714369457143317120.4407-
chr1010600283110600985610600470919.9523+
chr514760656314761451714761154117.9452-
chrX14347952114348525814348303215.1112+
chr1486195075862010278619906411.4795-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12935723499358084593577141110.391-
chr514666116114667018714666670783.6444-
chrUn_GL4563968709176801202177.0682-
chr312893132412894033812893678956.2041-
chr871427627714364347143317141.5876-
chrUn_GL4563896217153091067839.5104-
chr514760656314761451714761154125.8944-
chr1297056476970669069706178623.8997-
chrX14347952114348525814348303214.7997+
chr1486195075862010278619906414.7154-
Download the Full Merged Peak List


Visualization

Manual





Copyright © 2023 All Rights Reserved by Wu lab