DNA Damage Atlas


GSM4122799-WT_for_PRDM9-KO_END-seq




Basic Information

Manual

Sample ID:   

SRR10286902


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

age: juvenile


Spike-in Intensity:   

9.64054


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003417



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45639698531397912021172.361-
chr514666110014667003214666670182.9668-
chr1297056431970676499706144357.4477+
chr514760567114761431414761154143.726-
chr1630824489308330453082960740.9579-
chrUn_GL4563898430166301067837.1294-
chr871428674714355057143317131.0943-
chr1293572237935791519357713513.919-
chr990297979903056299030239110.9899-
chr698845079892226989011810.8777-
Download the Full Peak List




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