DNA Damage Atlas


GSM4122800-CAST_END-seq




Basic Information

Manual

Sample ID:   

SRR10286903


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

CAST/EiJ


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

age: adult


Spike-in Intensity:   

no spike in


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.009767



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563966043176531201872.7762-
chrUn_GL4563896462157171067847.268-
chr514666127214667036114666670724.5604-
chr1599729712997410589973569720.6197+
chr1293571125935811129357714616.6643-
chr312893125312894065512893678912.0833-
chr135817175158183472581778088.79281-
chr129705554297066989970614908.12035+
chrX1434772711434889701434830327.25681+
chr87142717271436929714331716.51838-
Download the Full Peak List




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