DNA Damage Atlas


GSM4126105-K562_treated_with_10074-G5_for_36_hours_bioreplica_2




Basic Information

Manual

Sample ID:   

SRR10298679


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

10074-G5 (c-Myc inhibitor)


Treatment Time:   

36hrs


Treatment Dose:   

40uM


In-situ Treatment:   

cells are crosslinked in situ with formaldehyde


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr126645117266451411664512902223.8/
chr23309158033092179330917892165.41/
chr11689000506890026068900154497.14/
chr11437030354370323843703135436.361/
chr2270400962704030627040200421.815/
chr6160521556160521840160521697401.022/
chr19512626955126290351262798273.774/
chr17327823832786113278423262.928/
chr1285766412857684928576744228.145/
chr2215030030215030286215030157210.084/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr23309158133092056330917892704.06/
chr126645117266451411664512902223.8/
chr11689000506890026068900154497.14/
chr11437030354370323843703135436.361/
chr2270400972704030527040200410.662/
chr6160521556160521840160521697401.022/
chr15779106627791089677910781324.473/
chr19512626955126290351262798273.774/
chr17327823832786113278423262.928/
chr1285766412857684628576744216.052/
Download the Full Merged Peak List



Motif Analysis

Manual





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