DNA Damage Atlas

GSM4126124-K562_treated_with_DMSO_for_6_hours_without_formaldehyde_crosslinking

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10298698


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

6hrs


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr126645117166451666664513048054.25/
chr116890004968900364689002052940.72/
chr23309158033092176330917842121.12/
chr55835834558358615583584791476.8/
chr71425604871425607771425606311457.17/
chr71052446111052449031052447561188.33/
chr139237561892375932923757741129.3/
chr22150300062150303172150301601008.07/
chr11437030344370336643703199883.187/
chr15779106657791118677910784843.224/
Download the Full Peak List


Visualization

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Motif Analysis

Manual





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